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Archive for February, 2007

Add LibWorm Search to any Web page

We’ve gotten a handful of requests for permission to add LibWorm searching to other Web pages. Please consider this post permission granted to any and all who want it.

We’ll even show you how to do it. :)

Just copy and paste this code into your Web page…
<p>Search LibWorm:</p>
<form action="http://www.libworm.com/rss/search.php" method="get">
<p>
<input name="qu" type="text" size="20px" maxlength="40"/>
<input name="s" type="submit" value="OK"/>
<input name="r" type="hidden" value="Any"/>
</form>
</p>

….and you’ll get something that looks very much like this:

Search LibWorm:

Feel free to customize to your heart’s content.

If you do add LibWorm to your own Web page, we’d love to know about it. Please leave a comment here or drop me an email (null) to let us know where you’ve put it or how you’ve adapted it.

Ovid MEDLINE Video Tutorial

Excellent video tutorial from Harvey Cushing/John Hay Whitney Medical Library at the Yale University School of medicine.

Click “Watch Video Demos” near the bottom of the screen.

PubMed Reader: Flexibility for PubMed RSS Feeds

Ever notice that once you’ve decided on your query in PubMed and made an RSS feed from it, you can’t make any changes to the query? If you want to adjust it, just make one small tweak, you have to start from scratch, make a new search, and output a new feed. This could be especially unwelcome if you’re doing something more than reading the feed in an aggregator. What if you’ve created it FOR a clinician and the clinician is already subscribed to it? What if you’re using the feed in another application or Web page?

PubMed Reader allows some flexibility that can be handy in these circumstances.
pubmedreaderlogo.png

You can run your search from PubMed Reader and export your RSS feed from PubMed Reader. Should you want to change the query that generates the feed, you can do so without changing the URL of the RSS feed.

PubMed Reader also has nifty export functions:

The output of this export is a bit of javascript that can easily be pasted into a Web page:

However, if I click on a link from a PubMed Reader feed, I’m taken to the PubMed Reader login prompt and made to log in order to read the item. I’d much rather that the links went directly to PubMed.

Other posts about third-party PubMed tools:

Story Time (Calgary Public Library)

Allergy Podcasts

Podcasts (both audio and video) available from the American College of Allergy, Asthma & Immunology (ACAAI)

Subscription links and notes on upcoming offerings are here.

[via Clinical Cases and Images]

TIME Magazine on EBM

time.png
Are Doctors Just Playing Hunches?

Nobody pretends medicine is easy, but if there’s one thing we ought to be able to rely on, it’s that the doctors looking out for us are doing more than playing hunches. We take certain medicines because they work, right? We go into the operating room for certain procedures because they’ll make us well, don’t we?

[via]

Also, check out the comments at Kevin, MD for very strong (and mostly negative) opinions on the nature, purpose and effects of EBM.

For MedLibs who use Macs: iPapers

This makes me want to get a Mac for our hospital library.

iPapers helps you manage all those PDFs. Name the PDF with the PubMed ID, and iPapers will pull all the metadata about each into its interface for you.

ipapers.png

In case you don’t get the idea: Have you ever opened a music file (like an .mp3) and seen the player software figure out who the musician and song are, then go online and pull up a picture of the CD cover and info about the album and artist? It’s like that for PDFs of articles. Then it lets you browse and search your PDFs by this metadata. You can also then export that metadata in .csv or Endnote XML format.

So. Freaking. Cool.

Could someone with a Mac please try this out and let me know if it as awesome as it looks?

Here’s an idea for EBSCO, Ovid, and Elsevier:
Make an application like this for Windows and give it away to your customers when they subscribe to a full-text service that includes PDF downloads. Development costs wouldn’t be very high, and your clients would love you for it.

Krafty is back!

In case you missed it, The Krafty Librarian is back to blogging after the birth of her second child, and has moved her blog to its own domain: http://www.kraftylibrarian.com/.

Also be sure to update your aggregator with her new feed URL: http://feeds.feedburner.com/kraftylibrarian/OLay.

Welcome back, Michelle!

Meredith Farkas’ Web 2.0 Presentations

Web 2.0 in Libraries: Theory and Practice
SLA Click University Live
From 1/10/2007

Web 2.0 in Libraries: The Tools of Web 2.0
SLA Click University Live
From 1/24/2007

Other presentations Meredith has uploaded to SlideShare

Online Spreadsheet Applications

List

Here are the web-based spreadsheet applications I’m aware of:

ajaxXLS

EditGrid

Xcellery

Google Docs & Spreadsheets

iRows

Numbler

NumSum

Simple Spreadsheet

ThinkFree Calc

Zoho Sheet

Comparison

This spreadsheet comparing EditGrid, Google Spreadsheets, iRows, Numbler, NumSum and Zoho Sheet has been created in each of the following applications, giving you yet another way to compare them:

EditGrid

Google Spreadsheet

iRows

Numbler

NumSum

Zoho Sheet

WikiCalc, iWoorx, and a video of interest to Web 2.0 enthusiasts

And here’s an interesting video about iWoorx Wiki Spreadsheets (built on WikiCalc).

Whatsthatbook.com

whatsthatbook.png

Are you looking for a book but can’t remember the title or author?
Founded by former Google Answers Researcher “Juggler,” Whatsthatbook.com is a FREE service that can help you find your book!

Cool!

(Thanks, Melissa!)

What Can Web 2.0 Offer The Research Community?

Presentation from Brian Kelly. Slide #25 (titled “The Librarian Fundamentalists“) is especially interesting.

If you find this interesting, you might like to see this other presentation of Brian’s.

My Name is Dotty

The NBC sitcom My Name is Earl broadcast an episode this season called Buried Treasure in which voice-over narration kept switching from character to character. For each switch, a gentle parody of the show’s opening sequence was created. Dotty, the town’s librarian, was a supporting character in the episode and got this treatment:

You know the kind of woman who seems like the quiet librarian, but when she removes her pencil and lets her hair fall down, she looks all wild and sexy?

[sigh] I wish that was me.

My name is Dotty…

Click here for similar moments for other characters in the same episode.

The L-Team

Nick Baker follows up his March of the Librarians with an A-Team parody.

I hope one day to buy Nick a drink. He rocks.

BioMed Central Podcasts on Open Access

BioMed Central Open Access Colloquium

Open Access: How Can We Achieve Quality and Quantity?
Location: The Royal College of Physicians, Regent’s Park, London NW1 4LE, UK

Feed of all podcasts

Detail and links to individual audio files
(Many also have accompanying slides)

“Digg for Medical Literature”

If you subscribe to Info To Go, please consider sharing with me the content of this item which I noticed via a LibWorm feed this morning.

I’m curious to see what it says.

Why would I be curious? No reason. I’m sure lots of people use this phrase, right?

Intermediate/Advanced LibWorm-Fu (Power Searching) Updated

We’ll start with the radio buttons, then move on to search operators that LibWorm understands.

RADIO BUTTONS

There are three radio buttons beneath LibWorm’s search field, any words, all words, and exact phrase.

any words
By default, any words is selected when you first load the main page of LibWorm in your web browser. Having this radio button selected tells LibWorm that your search results must contain at least one of the words you’re searching for. With the search below, you’re telling LibWorm you’d like to see results that contain either OPAC or sucks.
anywords.png

all words
The all words radio button tells LibWorm that you only want results that contain all of the words you’re searching for. Wth the search below, you’re telling LibWorm that you’d like to see results that contain both OPAC and sucks, but not necessarily in that order or near each other.
allwords.png

exact phrase
The exact phrase radio button tells LibWorm that you only want to see search results that contain exactly the characters in the exact sequence you typed into the search field. With the search below, you’re telling LibWorm that you only want to see posts that contain exactly “OPAC sucks”. Posts that don’t contain EXACTLY this string of characters in this sequence, even if they contain something very similar (like “OPACs suck”) will not appear in the results of this search.
exactphrase.png

SEARCH OPERATORS:

Note: For best results, select the any words radio button before using these operators.

” “
A phrase that is enclosed within double quote (” “) characters matches only rows that contain the phrase exactly as it was typed (see notes on “exact phrase” radio button above).

+
A plus sign before a word indicates to LibWorm that the word must be present in every result returned.

-
The leading minus sign indicates that the word must not appear in any search result returned.

*
The asterisk is the truncation or wildcard character in LibWorm.
Example: suck*
The set of results returned by this query will include items containing words like suck, sucks, sucked, sucker, sucking or “sucktastic.” Okay, no feed is indexed in LibWorm as having used the word “sucktastic” (…until about an hour after I post this).

( )
Parentheses group words into subexpressions.
Example: +”Meredith Farkas” +(”5 weeks” “Five Weeks”)
This query will produce results that contain the exact phrase “Meredith Farkas” AND either “five weeks” or “5 weeks”.

> <
These help influence the relevance sorting of returned search results. If the > is placed before a word or phrase, its “weight” in the sorting by relevance is increased. The < placed before a word or phrase lessens its “weight.”
Example: +”Walt Crawford” +(>”cites and insights” <”Walt at Random”)
This query will return only results that contain both the exact phrase “Walt Crawford” AND either “Cites and Insights” or “Walt at Random,” but it’ll place those that mention “Cites and Insights” higher in my list of results as ordered by relevance.

~
This operator is sort of like the -, but not as emphatic. A search term with this operator in front of it will not be excluded from results returned, but the term’s presence will not be considered in the sorting of results by relevance. It sort of de-emphasizes the search term without making it a hard, absolute NOT.

Try these operators out and you’ll find you can generate very, very specific results.

Searching by URL
To answer Walt’s questions in the comments below, searching by URL sometimes works and sometimes doesn’t because LibWorm strips out an item’s HTML. Searching by URL will work if the URL was in the text of the item, but not if it was only in the hyperlink. Also note that the source URL is not searchable, but the Source’s name is. More advanced searching (by source, by category, etc.) is on the way.

Want more help?

Do you have a query or feed you’d like to create but can’t get it to work in LibWorm? Want to run a query by us to make sure it is doing what you think it should? If LibWorm isn’t processing your query as expected, we’ll get it fixed. If you just need a pointer or two on how to get what you need, we can help with that, too- just drop me an email () so we can help.

Want to demonstrate LibWorm for your colleagues? We’ll be happy to help you get your presentation materials together or answer any questions you might have. If you have web conferencing software that can be applied, we’d be happy to demonstrate LibWorm for your group, too.

Keep the ideas and the questions coming- We love ‘em!

Two More MedLib Blogs (and badges)

Laurel Egan tells me she has been running a small medical library for fifteen years and is now earning her MLIS. A part of that process is taking LS 590 with Dr. Steven MacCall at the University of Alabama, and part of LS 590 is a requirement to blog. Laurel says she doesn’t take to the technology easily, but she’s worked out how to add the MedLib Blog badge to her sidebar, so it seems to me that she’s off to a running start. Here’s hoping she keeps blogging after she finishes the course.

laureleaganbadge.png
(I’m fond of Laurel’s blogroll, too.)

Jane Blumenthal is the director of Health Sciences Libraries at the University of Michigan in Ann Arbor, and has just kicked off her new blog, Health, Science, & Libraries, on the same week as her first foray into Second Life.

hsalbadge.png

Why is David so into this badgey stuff?

Previously, I’ve noted the following blogs that display the MedLib Blog badge in their sidebars:

If I’ve missed the badge on your blog or if you’ve just added it, please let me know so I can link to you from here.

Why would I want to add the badge to my blog?

The badge links back to the masterlist of MedLib blogs to indicate the blog’s membership in the growing community (and sense of community) of MedLib blogs(/bloggers). (This should serve also as a reminder to add yourself to this masterlist, if appropriate.)

To add this badge to your own blog, just copy and paste this code:


<a href="http://liswiki.org/wiki/Medlib_Blogs">
<img src="http://tinyurl.com/y32hh8/"></a>

Not sure how to do this with your particular blogging software? Email me at david[DOT]rothman[AT]gmail[DOT]com and we’ll figure it out together. :)

Medical Search Modules for Netvibes (Updated)

Update: Guus added modules for the KMLE Medical Dictionary and DermAtlas :)
____________________________________________________

One of the best things about blogging on topics of medical library geekery is that it puts me in touch with others pursuing similar interests.

Case in point: Guus van den Brekel and I chatted a couple of times today about search forms, tool bars, and Netvibes, discussing how best to make resources available to users.

Guus has already made my Consumer Health and Patient Education Custom Search Engine available in Second Life, but now he’s added it to Netvibes, too.

Also neat to see that Guus ran with my idea of adding more specialized clinical search engines like SearchingRadiology.com by making a Netvibes module for it. I hope he keeps going and manages to make a whole suite of Netvibes clinical search modules.

If you use Netvibes, check ‘em out.

I love that we’re using the internet to share ideas, collaborate, and make new tools- all cheaply, easily and openly. :)

PubMed2Connotea / PubMed2CiteULike

Not new, but new to me.

If you use CiteULike or Connotea and do research on PubMed, you may find this Firefox Greasemonkey User Script handy.

What is Pubmed2Connotea / Pubmed2CiteULike and how can I use it ?

Connotea or/and CiteULike are a free online reference management service. It allows you to save links to all your favourite articles, references, websites and other online resources with one click. Connotea is also a social bookmarking tool, so you can view other people’s collections to discover new, interesting content. Pubmed2connotea/Pubmed2CiteULike is a Greasemonkey user script which alters the content web page when browsing your bibliography on NCBI pubmed by inserting a hyperlink. This new link adds a new bookmark into connotea with the current selected paper.

pubmed2connotea.png

Get it here.

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